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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_14_15472900_15473657_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
15472900 - 15473657
Intron Length:
758

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTAAAAGCA
5'SS Class:
major
3'SS Sequence:
TTTCTGTATCCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AGTTAAC
U12 Branch Point Sequence:
GTTTCTGTATCC
Flanking Amino Acid:
RSDPTPLLKPDAPFFPPTPQ
Intron Amino Acid Position:
184

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73.3
0.55
1
63.8
34.2
Major BPS
65.7
0.39
1.1
67.4
36.7
Major PPT
81
0.7
0.9
73.6
40.9
Minor 5ss
30.2
-2.3
3.4
36.2
42.7
Minor BPS
51.5
0.03
2.2
70.66
41

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000004923
Chromosome:
14

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005087
15469338 - 15474839
5502