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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_14_15473782_15473952_F

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
15473782 - 15473952
Intron Length:
171

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTACCTTTA
5'SS Class:
major
3'SS Sequence:
TGGTTGTTTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTCTAAT
U12 Branch Point Sequence:
ACTTCTCTAATT
Flanking Amino Acid:
KYGCGYYGAPRRGGKGEKHK
Intron Amino Acid Position:
225

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74.9
0.59
1.2
75.2
37.7
Major BPS
82.2
0.8
0.9
81.6
27
Major PPT
80
0.67
1
76.9
42.1
Minor 5ss
48.2
-0.2
2.8
67.3
43.8
Minor BPS
64.3
0.53
1.6
78.67
38

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000004923
Chromosome:
14

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005087
15469338 - 15474839
5502