About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_14_15474108_15474648_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
15474108 - 15474648
Intron Length:
541

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAAGAGC
5'SS Class:
strong_major
3'SS Sequence:
TCATTTTCACCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AATTCAT
U12 Branch Point Sequence:
TTCCTCTCATTT
Flanking Amino Acid:
IDDGVQIRGAAFCVKLLCIH
Intron Amino Acid Position:
277

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.1
0.71
1
70.2
40.3
Major BPS
83.4
0.83
0.8
83.7
25.7
Major PPT
76.4
0.59
0.9
70.6
39.7
Minor 5ss
32
-2.1
3.2
43
44.2
Minor BPS
49.1
0.01
1.8
68.97
42.5

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000004923
Chromosome:
14

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005087
15469338 - 15474839
5502