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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_14_1550173_1560647_F

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
1550173 - 1560647
Intron Length:
10475

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TCG|GTAACTGCT
5'SS Class:
major
3'SS Sequence:
TTTTCCTCCACAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AATCAAC
U12 Branch Point Sequence:
TTTTCCTCCACA
Flanking Amino Acid:
TVPAEDEIVSHSDSNCNLKK
Intron Amino Acid Position:
363

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73.7
0.56
1.2
70.1
40.6
Major BPS
50.4
0.01
1.2
60.5
33
Major PPT
85.4
0.8
0.7
80.5
24.8
Minor 5ss
41.4
-1
3.2
59.9
44.5
Minor BPS
67.6
0.55
2
83.78
36.8

Associated Gene:

Gene:
GABRA6
Ensembl Gene ID:
ENSAPLG00000013172
Chromosome:
14

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013760
1541938 - 1560962
19025