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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_14_15502430_15503323_R

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
15502430 - 15503323
Intron Length:
894

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAA|GTAAGACAT
5'SS Class:
strong_major
3'SS Sequence:
CCTTCCGTCACAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCTTTAT
U12 Branch Point Sequence:
TCTTTCACAACC
Flanking Amino Acid:
QTQLDRNLCESLARGQKCQY
Intron Amino Acid Position:
419

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.9
0.73
1
74.4
35.9
Major BPS
83.9
0.84
1
73.9
41.3
Major PPT
74
0.54
0.9
67.5
32.4
Minor 5ss
35.3
-1.7
3.3
48.7
41.3
Minor BPS
56.6
0.19
1.8
71.2
40

Associated Gene:

Gene:
SLC25A48
Ensembl Gene ID:
ENSAPLG00000005100
Chromosome:
14

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000043827
15502166 - 15526136
23971