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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_14_15504872_15517882_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
15504872 - 15517882
Intron Length:
13011

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAA|GTAAGTGGT
5'SS Class:
strong_major
3'SS Sequence:
GCTATTCTTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TACTAAA
U12 Branch Point Sequence:
TGATACTAAATA
Flanking Amino Acid:
LQSYQNEGLKNESPLSCPCS
Intron Amino Acid Position:
352

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.5
0.84
0.9
79
35.3
Major BPS
77.5
0.68
0.8
76.2
24.6
Major PPT
80.6
0.69
0.9
77
37.1
Minor 5ss
36.1
-1.6
3.3
49.5
41.2
Minor BPS
54.4
0.13
1.8
66.12
40.2

Associated Gene:

Gene:
SLC25A48
Ensembl Gene ID:
ENSAPLG00000005100
Chromosome:
14

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000043827
15502166 - 15526136
23971