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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_14_15514611_15515175_R

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
3UTR
Intron Coordinates:
15514611 - 15515175
Intron Length:
565

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTCAGCGCA
5'SS Class:
major
3'SS Sequence:
CTTCTTTCAAAAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ACTTCAT
U12 Branch Point Sequence:
ACTTCATAAACC
Flanking Amino Acid:
3UTR
Intron Amino Acid Position:
3UTR

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73.9
0.56
1.3
66
40.2
Major BPS
78.6
0.71
1
79.6
32.9
Major PPT
68.9
0.43
1
71.7
31.8
Minor 5ss
32
-2.1
3.2
39.7
45.8
Minor BPS
57.5
0.21
2
69.86
41.5

Associated Gene:

Gene:
SLC25A48
Ensembl Gene ID:
ENSAPLG00000005100
Chromosome:
14

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000039577
15513865 - 15526136
12272