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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_14_15519241_15519423_R

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
15519241 - 15519423
Intron Length:
183

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGCACT
5'SS Class:
strong_major
3'SS Sequence:
TATGACTTGACAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
GTTTTAT
U12 Branch Point Sequence:
TATGACTTGACA
Flanking Amino Acid:
SSVWLAGGIADCMEAALSAL
Intron Amino Acid Position:
307

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
91.3
0.97
0.8
84.4
33.5
Major BPS
78.7
0.71
1.2
71.7
44.6
Major PPT
67.2
0.39
1.1
61.5
44
Minor 5ss
42
-0.9
2.9
58.6
45.7
Minor BPS
62.8
0.4
1.7
72.48
39.2

Associated Gene:

Gene:
SLC25A48
Ensembl Gene ID:
ENSAPLG00000005100
Chromosome:
14

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000046187
15518792 - 15526136
7345