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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_14_15520430_15521240_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
15520430 - 15521240
Intron Length:
811

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TCC|GTAAGTACT
5'SS Class:
major
3'SS Sequence:
CTTTCCCGTGTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTGTAAC
U12 Branch Point Sequence:
GCTCCTGTAACT
Flanking Amino Acid:
CVLTVYRNESVAGFFKGMSF
Intron Amino Acid Position:
140

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
72
0.52
1.3
75.7
40.1
Major BPS
62.2
0.3
1.2
65
38.7
Major PPT
74.4
0.55
0.9
69.9
30.9
Minor 5ss
40.2
-1.1
2.8
57.6
39.6
Minor BPS
55.2
0.24
2.1
73.8
43.1

Associated Gene:

Gene:
SLC25A48
Ensembl Gene ID:
ENSAPLG00000005100
Chromosome:
14

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000046187
15518792 - 15526136
7345
ENSAPLT00000043827
15502166 - 15526136
23971
ENSAPLT00000039577
15513865 - 15526136
12272
ENSAPLT00000005271
15505822 - 15526136
20315