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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_14_15521313_15524408_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
15521313 - 15524408
Intron Length:
3096

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAAACCC
5'SS Class:
major
3'SS Sequence:
ATGTGTTTTGCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTAAT
U12 Branch Point Sequence:
TTTTAATCACAT
Flanking Amino Acid:
VVGHPLDTIKTRLQAGQGYG
Intron Amino Acid Position:
116

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.5
0.7
1
65.8
38.4
Major BPS
99.5
1.23
0.5
98.2
4.2
Major PPT
79.6
0.67
0.9
73.4
41.3
Minor 5ss
32.6
-2
3.1
43.3
43.8
Minor BPS
44.7
-0.3
2.2
72.23
43.8

Associated Gene:

Gene:
SLC25A48
Ensembl Gene ID:
ENSAPLG00000005100
Chromosome:
14

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000043827
15502166 - 15526136
23971
ENSAPLT00000039577
15513865 - 15526136
12272
ENSAPLT00000005271
15505822 - 15526136
20315
ENSAPLT00000046187
15518792 - 15526136
7345