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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_14_15524453_15525835_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
15524453 - 15525835
Intron Length:
1383

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GCG|GTAGGTGCC
5'SS Class:
major
3'SS Sequence:
TTTTCCTCCCCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCAGCAT
U12 Branch Point Sequence:
TTTTGCGTAATA
Flanking Amino Acid:
LQDFAAGWVGGAASVVVGHP
Intron Amino Acid Position:
101

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.9
0.61
1.1
68.2
38.6
Major BPS
50.7
0.02
1.5
62
44.2
Major PPT
84.7
0.78
0.7
77.6
31.2
Minor 5ss
33
-1.9
3.4
44.8
43.3
Minor BPS
57.7
0.24
2.4
78.78
38.5

Associated Gene:

Gene:
SLC25A48
Ensembl Gene ID:
ENSAPLG00000005100
Chromosome:
14

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000046187
15518792 - 15526136
7345
ENSAPLT00000043827
15502166 - 15526136
23971
ENSAPLT00000039577
15513865 - 15526136
12272
ENSAPLT00000005271
15505822 - 15526136
20315