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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_14_15543584_15544392_R

Intron Information:

Intron Rank:
152599
Intron Class:
major
Intron Phase:
Intron Coordinates:
15543584 - 15544392
Intron Length:
809

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAATTGG
5'SS Class:
strong_major
3'SS Sequence:
GTGTTTCTTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCACAA
U12 Branch Point Sequence:
ACAACCTTAGCT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.3
0.71
0.9
68.2
39.6
Major BPS
68.5
0.46
1
75.3
29.8
Major PPT
83.8
0.76
0.8
81.2
36.5
Minor 5ss
33.5
-1.9
2.9
40.6
45.6
Minor BPS
60.7
0.41
1.6
72.41
43.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000029696
Chromosome:
14

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000040755
15543123 - 15545687
2565
ENSAPLT00000027663
15543123 - 15545687
2565