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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_14_15544627_15544730_R

Intron Information:

Intron Rank:
152600
Intron Class:
major
Intron Phase:
Intron Coordinates:
15544627 - 15544730
Intron Length:
104

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTGCTTTGT
5'SS Class:
major
3'SS Sequence:
CCTTGCCTTGCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCTTTAT
U12 Branch Point Sequence:
AGGTCTTTATGG
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
64.3
0.34
1.1
60.5
40.6
Major BPS
83.9
0.84
1
73.9
41.3
Major PPT
79.7
0.67
0.8
72.8
32
Minor 5ss
35.6
-1.6
3.1
47.1
43.5
Minor BPS
47.1
-0.3
1.9
49.91
44.4

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000029696
Chromosome:
14

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000027663
15543123 - 15545687
2565