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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_14_15601089_15601982_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
15601089 - 15601982
Intron Length:
894

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGGGTC
5'SS Class:
strong_major
3'SS Sequence:
CCTTCTCTTCCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AGTTAAA
U12 Branch Point Sequence:
CTGCAGTTAAAT
Flanking Amino Acid:
FIAMCLASAEGVKCKCSRKG
Intron Amino Acid Position:
22

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.7
0.96
0.8
81.9
31.6
Major BPS
66.4
0.41
1.1
67.7
36.5
Major PPT
84.8
0.78
0.7
76.5
32.1
Minor 5ss
33.8
-1.8
3.7
49.2
47.3
Minor BPS
45.1
-0.2
2.3
63.6
46

Associated Gene:

Gene:
CXCL14
Ensembl Gene ID:
ENSAPLG00000005214
Chromosome:
14

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005384
15601025 - 15607871
6847