About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_14_15602089_15606122_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
15602089 - 15606122
Intron Length:
4034

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAT|GTAAGTTTT
5'SS Class:
strong_major
3'SS Sequence:
GCTTCCTTTGCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTATAAC
U12 Branch Point Sequence:
GCCCCTATAACC
Flanking Amino Acid:
RYPFCVEEMIIVTLWTRVRG
Intron Amino Acid Position:
57

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.2
0.88
0.9
89.9
23.2
Major BPS
65.6
0.39
1.1
67.7
34.6
Major PPT
82.8
0.74
0.8
76.6
32
Minor 5ss
48.6
-0.1
2.8
71.8
38.1
Minor BPS
50.2
-0
1.6
57.26
41.3

Associated Gene:

Gene:
CXCL14
Ensembl Gene ID:
ENSAPLG00000005214
Chromosome:
14

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005384
15601025 - 15607871
6847