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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_14_15606234_15607855_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
15606234 - 15607855
Intron Length:
1622

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGCGTG
5'SS Class:
strong_major
3'SS Sequence:
TCCTCCTGTCCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTAAAT
U12 Branch Point Sequence:
GTTTAAATACTT
Flanking Amino Acid:
KWYRVWKEKGRVYEE*
Intron Amino Acid Position:
94

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89.2
0.92
0.9
76.2
39.9
Major BPS
82.3
0.8
0.9
87.6
25.7
Major PPT
76.2
0.59
0.9
68.5
37.3
Minor 5ss
39.9
-1.1
3.4
55
49.2
Minor BPS
43.9
-0.3
2.2
68.17
42.3

Associated Gene:

Gene:
CXCL14
Ensembl Gene ID:
ENSAPLG00000005214
Chromosome:
14

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005384
15601025 - 15607871
6847