About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_14_15623579_15623798_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
15623579 - 15623798
Intron Length:
220

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAT|GTGAGTACC
5'SS Class:
strong_major
3'SS Sequence:
TTCTCTCCCGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TAGTGAC
U12 Branch Point Sequence:
GTGACCGGAGCC
Flanking Amino Acid:
MMPSEAASSG
Intron Amino Acid Position:
1

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.3
0.72
1
77
31.3
Major BPS
63.6
0.34
1.2
55.1
42.1
Major PPT
81.6
0.71
0.7
77.1
24.9
Minor 5ss
34
-1.8
2.7
42.8
36.9
Minor BPS
41.7
-0.6
2.2
53.02
44

Associated Gene:

Gene:
NEUROG1
Ensembl Gene ID:
ENSAPLG00000031251
Chromosome:
14

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000029891
15622938 - 15624306
1369