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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_14_15697112_15701950_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
5UTR
Intron Coordinates:
15697112 - 15701950
Intron Length:
4839

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGCCCA
5'SS Class:
strong_major
3'SS Sequence:
CCCTAATATATAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATTGAT
U12 Branch Point Sequence:
TTTTCCCTAATA
Flanking Amino Acid:
5UTR
Intron Amino Acid Position:
5UTR

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.6
0.89
0.9
71.6
40.2
Major BPS
88.6
0.96
0.8
77.7
37.1
Major PPT
64.1
0.32
0.9
57.7
36.4
Minor 5ss
38.2
-1.3
3
48.7
47
Minor BPS
77.7
0.86
1.6
88.3
28.6

Associated Gene:

Gene:
MACROH2A1
Ensembl Gene ID:
ENSAPLG00000005243
Chromosome:
14

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000046118
15697052 - 15734838
37787
ENSAPLT00000042997
15697052 - 15739524
42473
ENSAPLT00000005452
15697052 - 15739524
42473