About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_14_15716051_15717569_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
15716051 - 15717569
Intron Length:
1519

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGAAAA
5'SS Class:
strong_major
3'SS Sequence:
TATTTTTTATTAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTGTCAT
U12 Branch Point Sequence:
TATTTTTTATTA
Flanking Amino Acid:
AVANDEELNQLLKGVTIASG
Intron Amino Acid Position:
94

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
92.9
1.01
0.7
86
23.7
Major BPS
84.8
0.86
1.1
85.7
34.9
Major PPT
81.3
0.7
0.8
82.6
33.4
Minor 5ss
32.8
-2
2.9
39.7
45.8
Minor BPS
62.8
0.4
1.5
71.52
35

Associated Gene:

Gene:
MACROH2A1
Ensembl Gene ID:
ENSAPLG00000005243
Chromosome:
14

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000042997
15697052 - 15739524
42473
ENSAPLT00000027979
15697052 - 15739399
42348
ENSAPLT00000023726
15701951 - 15739399
37449
ENSAPLT00000046118
15697052 - 15734838
37787
ENSAPLT00000005452
15697052 - 15739524
42473
ENSAPLT00000045142
15706242 - 15739399
33158