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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_14_15719745_15725931_F

Intron Information:

Intron Rank:
5
Intron Class:
major-like
Intron Phase:
0
Intron Coordinates:
15719745 - 15725931
Intron Length:
6187

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTATGCTTC
5'SS Class:
weak_major
3'SS Sequence:
CTTTTCTTTTCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ACCTCAT
U12 Branch Point Sequence:
TATTTCCCACCT
Flanking Amino Acid:
STKSLFLGQKLNLIHSEISN
Intron Amino Acid Position:
197

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.9
0.77
0.9
74.9
36.3
Major BPS
73.5
0.58
1
73.6
32.5
Major PPT
93.5
0.98
0.6
92.1
18.4
Minor 5ss
65.8
0.53
2.2
76
40.1
Minor BPS
48
-0
2.1
73.95
42.6

Associated Gene:

Gene:
MACROH2A1
Ensembl Gene ID:
ENSAPLG00000005243
Chromosome:
14

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000045142
15706242 - 15739399
33158
ENSAPLT00000027979
15697052 - 15739399
42348
ENSAPLT00000005452
15697052 - 15739524
42473