About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_14_15719745_15727493_F

Intron Information:

Intron Rank:
4
Intron Class:
major-like
Intron Phase:
0
Intron Coordinates:
15719745 - 15727493
Intron Length:
7749

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTATGCTTC
5'SS Class:
weak_major
3'SS Sequence:
TTACCTGTTGTAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATACAT
U12 Branch Point Sequence:
ATCTGTTTACCT
Flanking Amino Acid:
STKSLFLGQKLQVVQADIAT
Intron Amino Acid Position:
197

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.9
0.77
0.9
74.9
36.3
Major BPS
74.9
0.62
1
81.3
29.9
Major PPT
74.4
0.55
0.9
69.5
36.5
Minor 5ss
65.8
0.53
2.2
76
40.1
Minor BPS
52.8
0.17
2
73.4
44.1

Associated Gene:

Gene:
MACROH2A1
Ensembl Gene ID:
ENSAPLG00000005243
Chromosome:
14

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000042997
15697052 - 15739524
42473
ENSAPLT00000023726
15701951 - 15739399
37449