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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_14_15726032_15731473_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
15726032 - 15731473
Intron Length:
5442

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTAAATGGG
5'SS Class:
strong_major
3'SS Sequence:
ATTCTCTGTTCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AAATAAC
U12 Branch Point Sequence:
AGTAAAATAACA
Flanking Amino Acid:
NADIDLKDDLGSTLEKKGGK
Intron Amino Acid Position:
230

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.8
0.8
0.9
69.5
41.5
Major BPS
61.3
0.28
1
62
30.6
Major PPT
79.4
0.66
0.9
77.5
36.2
Minor 5ss
31.4
-2.1
3.2
40.6
45.6
Minor BPS
45.2
-0.3
2
59.52
38.8

Associated Gene:

Gene:
MACROH2A1
Ensembl Gene ID:
ENSAPLG00000005243
Chromosome:
14

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000027979
15697052 - 15739399
42348
ENSAPLT00000005452
15697052 - 15739524
42473
ENSAPLT00000045142
15706242 - 15739399
33158