About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_14_15727585_15734663_F

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
15727585 - 15734663
Intron Length:
7079

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTAATGGAA
5'SS Class:
major
3'SS Sequence:
CATTTCTTACTAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTTTCAT
U12 Branch Point Sequence:
CATTTCTTACTA
Flanking Amino Acid:
NSDFYTGGEVAVVSAGHGLP
Intron Amino Acid Position:
227

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.7
0.7
1
71.2
34.2
Major BPS
87.6
0.93
0.9
89.3
26
Major PPT
73.1
0.52
0.9
67.1
38.8
Minor 5ss
28.6
-2.5
3.5
37.7
47.1
Minor BPS
60.8
0.33
1.6
67.46
39.7

Associated Gene:

Gene:
MACROH2A1
Ensembl Gene ID:
ENSAPLG00000005243
Chromosome:
14

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000023726
15701951 - 15739399
37449