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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_14_15731003_15731473_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
15731003 - 15731473
Intron Length:
471

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGTCTC
5'SS Class:
strong_major
3'SS Sequence:
ATTCTCTGTTCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AAATAAC
U12 Branch Point Sequence:
AGTAAAATAACA
Flanking Amino Acid:
PPVGVRDQDQGALWKRKAAR
Intron Amino Acid Position:
231

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
91.5
0.98
0.8
81.3
32.8
Major BPS
61.3
0.28
1
62
30.6
Major PPT
79.4
0.66
0.9
77.5
36.2
Minor 5ss
33.3
-1.9
3
43.8
43.9
Minor BPS
45.2
-0.3
2
59.52
38.8

Associated Gene:

Gene:
MACROH2A1
Ensembl Gene ID:
ENSAPLG00000005243
Chromosome:
14

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000046118
15697052 - 15734838
37787