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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_14_15731564_15734663_F

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
15731564 - 15734663
Intron Length:
3100

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGAGGCTC
5'SS Class:
strong_major
3'SS Sequence:
CATTTCTTACTAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTTTCAT
U12 Branch Point Sequence:
CATTTCTTACTA
Flanking Amino Acid:
KKNGPLDIAGAVVSAGHGLP
Intron Amino Acid Position:
260

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.2
0.83
0.9
73
38.2
Major BPS
87.6
0.93
0.9
89.3
26
Major PPT
73.1
0.52
0.9
67.1
38.8
Minor 5ss
29.9
-2.3
3.4
41
45.6
Minor BPS
60.8
0.33
1.6
67.46
39.7

Associated Gene:

Gene:
MACROH2A1
Ensembl Gene ID:
ENSAPLG00000005243
Chromosome:
14

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000045142
15706242 - 15739399
33158
ENSAPLT00000042997
15697052 - 15739524
42473
ENSAPLT00000027979
15697052 - 15739399
42348
ENSAPLT00000005452
15697052 - 15739524
42473
ENSAPLT00000046118
15697052 - 15734838
37787