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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_14_15734839_15739233_F

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
15734839 - 15739233
Intron Length:
4395

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGGCTG
5'SS Class:
strong_major
3'SS Sequence:
TTTCTCTTATTAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCTTGAT
U12 Branch Point Sequence:
TTTCTCTTATTA
Flanking Amino Acid:
SIAFPSIGSGRNGFPKQTAA
Intron Amino Acid Position:
318

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.5
0.91
0.9
73.4
43.3
Major BPS
83.8
0.84
1
73.6
41.8
Major PPT
81.3
0.71
0.8
82.4
27.8
Minor 5ss
34.4
-1.8
3.4
46.7
48.6
Minor BPS
65.6
0.49
1.5
76.26
35.1

Associated Gene:

Gene:
MACROH2A1
Ensembl Gene ID:
ENSAPLG00000005243
Chromosome:
14

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000027979
15697052 - 15739399
42348
ENSAPLT00000023726
15701951 - 15739399
37449
ENSAPLT00000005452
15697052 - 15739524
42473
ENSAPLT00000045142
15706242 - 15739399
33158
ENSAPLT00000042997
15697052 - 15739524
42473