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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_14_15814348_15816697_R

Intron Information:

Intron Rank:
135850
Intron Class:
major
Intron Phase:
Intron Coordinates:
15814348 - 15816697
Intron Length:
2350

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAGGCAA
5'SS Class:
strong_major
3'SS Sequence:
TCTTTTTGTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTCCAG
U12 Branch Point Sequence:
GGTCCCAAAATT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.8
0.92
0.9
74.9
37
Major BPS
53.4
0.08
1.7
72.5
43.5
Major PPT
87
0.83
0.8
83.9
31
Minor 5ss
30.1
-2.3
3.2
37.9
46.9
Minor BPS
48.5
-0
1.9
68.32
42.1

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000020495
Chromosome:
14

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000030741
15813218 - 15818014
4797