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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_14_15834306_15834378_F

Intron Information:

Intron Rank:
149277
Intron Class:
major
Intron Phase:
Intron Coordinates:
15834306 - 15834378
Intron Length:
73

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAAGGGA
5'SS Class:
major
3'SS Sequence:
CTTCCTTCCAAAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTAAA
U12 Branch Point Sequence:
TTTCTTTTAAAC
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79
0.68
1
66.4
39.3
Major BPS
90.4
1
0.7
90.2
19.3
Major PPT
69.4
0.44
1
70.3
28
Minor 5ss
27.9
-2.5
3.5
38
46.8
Minor BPS
68.8
0.57
1.3
76.65
32.7

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000030272
Chromosome:
14

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000042673
15828896 - 15834710
5815