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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_14_15909049_15911865_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
15909049 - 15911865
Intron Length:
2817

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAACCCCC
5'SS Class:
major
3'SS Sequence:
CACCCCACCGCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AACAAAA
U12 Branch Point Sequence:
AAAACCACGACA
Flanking Amino Acid:
ASESSDTEVPEKERSGEQKN
Intron Amino Acid Position:
55

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73.5
0.55
1.2
60.6
44.5
Major BPS
51.5
0.04
0.9
57.3
24.9
Major PPT
62.2
0.27
0.8
54.6
28.7
Minor 5ss
44.7
-0.6
2.9
60.8
43.7
Minor BPS
44.9
-0.4
1.8
53.08
37.9

Associated Gene:

Gene:
PITX1
Ensembl Gene ID:
ENSAPLG00000028077
Chromosome:
14

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000021838
15908867 - 15915018
6152