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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_14_15930164_15937599_R

Intron Information:

Intron Rank:
144604
Intron Class:
major
Intron Phase:
Intron Coordinates:
15930164 - 15937599
Intron Length:
7436

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTAAGATAA
5'SS Class:
strong_major
3'SS Sequence:
TTTTCTCTTGTAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AACTGAA
U12 Branch Point Sequence:
GAAAACTGAATT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.3
0.81
0.9
75.7
29.2
Major BPS
65.6
0.39
0.9
55.4
32.7
Major PPT
89
0.88
0.6
85.4
21.8
Minor 5ss
37.4
-1.4
3
44.1
44.7
Minor BPS
48.6
-0
1.6
62.43
40.6

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000025144
Chromosome:
14

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000019625
15928945 - 15939036
10092
ENSAPLT00000017555
15928945 - 15947384
18440