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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_14_15937948_15938775_R

Intron Information:

Intron Rank:
144607
Intron Class:
major
Intron Phase:
Intron Coordinates:
15937948 - 15938775
Intron Length:
828

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CGG|GTAAGGACA
5'SS Class:
strong_major
3'SS Sequence:
CCTTTTTCTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTTAT
U12 Branch Point Sequence:
AATTCATTATTT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.2
0.74
1
72.3
39
Major BPS
88.7
0.96
0.8
78
36.5
Major PPT
88.5
0.87
0.6
84
24
Minor 5ss
32.1
-2
3
32.8
41.8
Minor BPS
58.7
0.35
1.8
77.1
39.2

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000025144
Chromosome:
14

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000019625
15928945 - 15939036
10092