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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_14_15949690_15950284_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
15949690 - 15950284
Intron Length:
595

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAATGATC
5'SS Class:
strong_major
3'SS Sequence:
CTTTCCCTTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCCTAAT
U12 Branch Point Sequence:
GCCGTCCTAATG
Flanking Amino Acid:
HPEWFNVYSKVQITLISHDC
Intron Amino Acid Position:
64

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.9
0.75
1
78.8
35.1
Major BPS
81.9
0.79
0.9
80.1
30
Major PPT
87.6
0.85
0.6
85
22.6
Minor 5ss
36.9
-1.5
3.3
51.7
45.1
Minor BPS
45
-0.5
1.8
43.49
42.8

Associated Gene:

Gene:
PCBD2
Ensembl Gene ID:
ENSAPLG00000013164
Chromosome:
14

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013702
15949594 - 15968127
18534