About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_14_15950366_15967967_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
15950366 - 15967967
Intron Length:
17602

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAATTATT
5'SS Class:
strong_major
3'SS Sequence:
TTTTCTGTCCTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AGGTGAA
U12 Branch Point Sequence:
TTTTTCCTCTCT
Flanking Amino Acid:
KEFNFKNFNQAFGFMTRVAL
Intron Amino Acid Position:
37

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89.7
0.94
0.8
92.8
22.7
Major BPS
49.2
-0
1.3
40.8
41.4
Major PPT
79.5
0.66
0.8
73.3
37.1
Minor 5ss
41.7
-0.9
2.9
60.3
44.1
Minor BPS
41.3
-0.5
3.7
80
42.1

Associated Gene:

Gene:
PCBD2
Ensembl Gene ID:
ENSAPLG00000013164
Chromosome:
14

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013702
15949594 - 15968127
18534