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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_14_15968072_15968123_R

Intron Information:

Intron Rank:
1
Intron Class:
major-like
Intron Phase:
1
Intron Coordinates:
15968072 - 15968123
Intron Length:
52

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGG|GTTTTATTT
5'SS Class:
weak_major
3'SS Sequence:
TGGCTAACAACAG|A
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
CTTTAAT
U12 Branch Point Sequence:
CATTGGCTAACA
Flanking Amino Acid:
MEERNQVLLDL
Intron Amino Acid Position:
2

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
53.9
0.09
1.2
59.1
40.3
Major BPS
87.2
0.92
0.9
87.6
25.6
Major PPT
59.3
0.21
1
52.6
40.7
Minor 5ss
46
-0.4
2.8
58.3
46
Minor BPS
43.6
-0.4
2.6
60.91
44.9

Associated Gene:

Gene:
PCBD2
Ensembl Gene ID:
ENSAPLG00000013164
Chromosome:
14

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013702
15949594 - 15968127
18534