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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_14_15972988_15973517_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
15972988 - 15973517
Intron Length:
530

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAATTTAC
5'SS Class:
strong_major
3'SS Sequence:
TTGTGTTTGACAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTATAC
U12 Branch Point Sequence:
TTTTCCTTTATA
Flanking Amino Acid:
FLALDASQHSSLSTRFGTVA
Intron Amino Acid Position:
228

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.3
0.86
0.9
80.3
28.1
Major BPS
69.3
0.48
1.1
67
39.5
Major PPT
75.7
0.58
1.1
72.2
42.7
Minor 5ss
40.6
-1.1
2.8
52.6
44.6
Minor BPS
78.8
0.9
1.5
87.38
30.3

Associated Gene:

Gene:
TXNDC15
Ensembl Gene ID:
ENSAPLG00000017719
Chromosome:
14

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000048481
15971295 - 15975244
3950