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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_14_15974641_15975192_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
15974641 - 15975192
Intron Length:
552

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CCG|GTGAGGGCG
5'SS Class:
major
3'SS Sequence:
GATTCCGGTGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TAATGAT
U12 Branch Point Sequence:
GATTCTGTGATT
Flanking Amino Acid:
LAGLGGALAAGDVTELSAAG
Intron Amino Acid Position:
18

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74.2
0.57
1
57.8
41.3
Major BPS
76.8
0.67
1
66
40.9
Major PPT
65.2
0.34
1.1
58.1
42.7
Minor 5ss
24.6
-2.9
3.3
30.6
42.7
Minor BPS
52.3
0.15
2
72.09
39.4

Associated Gene:

Gene:
TXNDC15
Ensembl Gene ID:
ENSAPLG00000017719
Chromosome:
14

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000048481
15971295 - 15975244
3950