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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_14_15998331_15999052_R

Intron Information:

Intron Rank:
22
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
15998331 - 15999052
Intron Length:
722

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTG|GTAAGTGAA
5'SS Class:
strong_major
3'SS Sequence:
CCTTTATTTGCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTAAC
U12 Branch Point Sequence:
TCTCCTTTATTT
Flanking Amino Acid:
RLIKEELIRLQNSYQPTNKG
Intron Amino Acid Position:
1031

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.5
0.91
0.8
79.4
28.8
Major BPS
89.7
0.98
0.7
89.9
20
Major PPT
85.9
0.81
0.8
80.5
30.3
Minor 5ss
32.1
-2
3.1
36.8
41.9
Minor BPS
62.4
0.47
1.6
76.8
40.5

Associated Gene:

Gene:
DDX46
Ensembl Gene ID:
ENSAPLG00000013208
Chromosome:
14

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013790
15998283 - 16019450
21168