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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_14_15999959_16002014_R

Intron Information:

Intron Rank:
20
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
15999959 - 16002014
Intron Length:
2056

Sequence Information:

Terminal Dinucleotides:
GC-AG
5'SS Sequence:
CAG|GCAAGTAAC
5'SS Class:
strong_major
3'SS Sequence:
CTTTACCTTGCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCTTGAT
U12 Branch Point Sequence:
TATCCTTTACCT
Flanking Amino Acid:
EELEINDFPQTARWKVTSKE
Intron Amino Acid Position:
958

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
99.1
1.16
0.7
89.2
28.7
Major BPS
83.8
0.84
1
73.6
41.8
Major PPT
83.7
0.76
0.8
77.4
31
Minor 5ss
25.7
-2.8
3.6
35.8
41.1
Minor BPS
67.3
0.62
1.6
82.59
38.5

Associated Gene:

Gene:
DDX46
Ensembl Gene ID:
ENSAPLG00000013208
Chromosome:
14

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013790
15998283 - 16019450
21168