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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_14_16004640_16005228_R

Intron Information:

Intron Rank:
16
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
16004640 - 16005228
Intron Length:
589

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAA|GTAAGTATA
5'SS Class:
strong_major
3'SS Sequence:
TAATTTTGACTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTAAA
U12 Branch Point Sequence:
TTTAAATTAATT
Flanking Amino Acid:
AGRTGRAGNKGFAYTFITED
Intron Amino Acid Position:
723

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.8
0.91
0.8
89.9
22.1
Major BPS
90.4
1
0.7
90.2
19.3
Major PPT
64.6
0.33
1.1
59.7
45.5
Minor 5ss
41
-1
2.8
51.7
39.1
Minor BPS
62
0.46
1.8
83.39
37.1

Associated Gene:

Gene:
DDX46
Ensembl Gene ID:
ENSAPLG00000013208
Chromosome:
14

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013790
15998283 - 16019450
21168