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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_14_16009760_16010419_R

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
16009760 - 16010419
Intron Length:
660

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATTCAAA
5'SS Class:
major
3'SS Sequence:
GTTTTAAAACCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTAAA
U12 Branch Point Sequence:
GTTAAATTAATT
Flanking Amino Acid:
VYGGTGISEQIAELKRGAEI
Intron Amino Acid Position:
495

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
72.7
0.54
1.1
68.7
37.6
Major BPS
90.4
1
0.7
90.2
19.3
Major PPT
65.1
0.34
1.1
57.8
45.7
Minor 5ss
44.9
-0.6
2.6
57.3
47
Minor BPS
56.2
0.27
1.8
76.3
39.7

Associated Gene:

Gene:
DDX46
Ensembl Gene ID:
ENSAPLG00000013208
Chromosome:
14

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013790
15998283 - 16019450
21168