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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_14_16013070_16013382_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
16013070 - 16013382
Intron Length:
313

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAAATCA
5'SS Class:
strong_major
3'SS Sequence:
CCTGTTTTTGCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATGTAAT
U12 Branch Point Sequence:
TTTCTCTCACCT
Flanking Amino Acid:
SVKGGGGSEKKTGPTVTKVV
Intron Amino Acid Position:
262

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82
0.75
0.9
73.8
30.8
Major BPS
75.6
0.64
1.1
75.7
36.5
Major PPT
84.9
0.79
0.8
79.6
32.3
Minor 5ss
37.6
-1.4
3.1
48.6
47.1
Minor BPS
58.4
0.34
1.8
81.4
40.1

Associated Gene:

Gene:
DDX46
Ensembl Gene ID:
ENSAPLG00000013208
Chromosome:
14

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013790
15998283 - 16019450
21168