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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_14_16013991_16014943_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
16013991 - 16014943
Intron Length:
953

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAGAAGCT
5'SS Class:
major
3'SS Sequence:
TTGTTTTTCTTAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTCAC
U12 Branch Point Sequence:
ATTTTCACAATT
Flanking Amino Acid:
DATASTVATENFDQNKLEEE
Intron Amino Acid Position:
156

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
72.2
0.52
1.1
65.8
38.4
Major BPS
90.1
0.99
0.7
91.6
20.3
Major PPT
84.3
0.77
0.7
84.8
30
Minor 5ss
31
-2.2
3.7
47.8
47.9
Minor BPS
57.5
0.31
1.8
79.42
36.5

Associated Gene:

Gene:
DDX46
Ensembl Gene ID:
ENSAPLG00000013208
Chromosome:
14

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013790
15998283 - 16019450
21168