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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_14_16017591_16019433_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
16017591 - 16019433
Intron Length:
1843

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGGGCA
5'SS Class:
strong_major
3'SS Sequence:
ATTTGCAATGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTCAT
U12 Branch Point Sequence:
TTTTTCATAAAT
Flanking Amino Acid:
MGRESRHYRKRSASR
Intron Amino Acid Position:
6

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85
0.82
0.9
71.8
33.2
Major BPS
100
1.24
0.5
100
0
Major PPT
70.9
0.47
1
64.1
41.2
Minor 5ss
24.1
-3
3.2
29.7
43.3
Minor BPS
70
0.71
1.7
90.16
33.1

Associated Gene:

Gene:
DDX46
Ensembl Gene ID:
ENSAPLG00000013208
Chromosome:
14

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013790
15998283 - 16019450
21168