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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_14_16022622_16023800_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
16022622 - 16023800
Intron Length:
1179

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAAATAA
5'SS Class:
strong_major
3'SS Sequence:
GTTTTTCTTTTAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTATAAC
U12 Branch Point Sequence:
TATAACCGAAGA
Flanking Amino Acid:
YMGLSKYFPKSEKKVKTTVL
Intron Amino Acid Position:
229

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.7
0.77
0.9
76.3
28.1
Major BPS
77.9
0.69
1
78.3
31.3
Major PPT
86.7
0.83
0.7
85.5
29.2
Minor 5ss
36.6
-1.5
3.1
46.9
48.4
Minor BPS
42.1
-0.6
2.1
56.65
41.5

Associated Gene:

Gene:
CAMLG
Ensembl Gene ID:
ENSAPLG00000013700
Chromosome:
14

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014272
16022430 - 16026542
4113