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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_14_16023867_16024608_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
16023867 - 16024608
Intron Length:
742

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTG|GTGAGTTCA
5'SS Class:
strong_major
3'SS Sequence:
TCTGTTCCTCCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCTTCAT
U12 Branch Point Sequence:
TCTTCATGTATT
Flanking Amino Acid:
AVRAFVCKYLSIFAPFLTLQ
Intron Amino Acid Position:
207

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.2
0.81
0.9
75.5
29.5
Major BPS
87.4
0.93
0.9
87.9
29.5
Major PPT
82.2
0.72
0.8
73.6
37
Minor 5ss
35.2
-1.7
2.8
38.4
40.8
Minor BPS
49.4
0.03
2.1
73.93
42.7

Associated Gene:

Gene:
CAMLG
Ensembl Gene ID:
ENSAPLG00000013700
Chromosome:
14

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014272
16022430 - 16026542
4113