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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_14_16025064_16026379_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
16025064 - 16026379
Intron Length:
1316

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGG|GTGAGCCGG
5'SS Class:
major
3'SS Sequence:
TTCTCTTCCTTAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCTGTAT
U12 Branch Point Sequence:
GTGTGCATAACT
Flanking Amino Acid:
IMGFHRPAAKDDDSHGESKL
Intron Amino Acid Position:
55

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
71.4
0.5
1.1
50.6
47.7
Major BPS
58.9
0.22
1.5
59.6
46.8
Major PPT
81.1
0.7
0.7
81
24.2
Minor 5ss
31.4
-2.1
3
30.3
42.8
Minor BPS
56.7
0.29
2.1
77.78
44.2

Associated Gene:

Gene:
CAMLG
Ensembl Gene ID:
ENSAPLG00000013700
Chromosome:
14

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014272
16022430 - 16026542
4113