About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_14_16037523_16038168_R

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
16037523 - 16038168
Intron Length:
646

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTATGCAGA
5'SS Class:
strong_major
3'SS Sequence:
TTTGTCCTTCCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AACTAAC
U12 Branch Point Sequence:
AAAAAACTAACA
Flanking Amino Acid:
PQMLIVSDIEDVFIPMPENL
Intron Amino Acid Position:
580

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.4
0.74
1
70.6
41.3
Major BPS
68
0.45
0.9
67.6
25.3
Major PPT
86.2
0.81
0.8
77.7
36.7
Minor 5ss
44.8
-0.6
2.6
57.7
46.6
Minor BPS
42.7
-0.5
2
52.74
37.6

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000013847
Chromosome:
14

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000039524
16031437 - 16051011
19575
ENSAPLT00000014456
16031437 - 16051011
19575