Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_14_16039803_16040095_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

16039803 - 16040095

Intron Length:

293

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

ATG|GTAGGTTTT

5'SS Class:

strong_major

3'SS Sequence:

TTTACCTGCACAG|T

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TATTAAT

U12 Branch Point Sequence:

AATGTATTAATT

Flanking Amino Acid:

KCNLCYRVNDVPEEFMYNPV

Intron Amino Acid Position:

466

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

81.4

0.74

80.5

34.9

Major BPS

91.8

1.04

0.7

90.2

19.3

Major PPT

73.8

0.54

0.9

68.5

37.2

Minor 5ss

44.9

-0.5

3.2

63.2

43.8

Minor BPS

56.8

0.29

1.7

72.26

38.8

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000013847

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000039524

16031437 - 16051011

19575

ENSAPLT00000014456

16031437 - 16051011

19575