Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_14_16040223_16041029_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

16040223 - 16041029

Intron Length:

807

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

TCG|GTATGAAAA

5'SS Class:

major

3'SS Sequence:

TTTTCTTTTCCAG|C

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TTTAAAA

U12 Branch Point Sequence:

GACGCTTTAAAA

Flanking Amino Acid:

LLLHPFKDLSQLPVVTSSTI

Intron Amino Acid Position:

424

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

75.6

0.6

69.9

35.8

Major BPS

73.1

0.58

79.6

29.1

Major PPT

1.01

0.6

88.4

28.7

Minor 5ss

39.4

-1.2

2.9

49.3

46.7

Minor BPS

54.3

0.13

1.5

58.26

41.2

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000013847

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000039524

16031437 - 16051011

19575

ENSAPLT00000014456

16031437 - 16051011

19575