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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_14_16042786_16043388_R

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
16042786 - 16043388
Intron Length:
603

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAGGTTTT
5'SS Class:
strong_major
3'SS Sequence:
TATTGGACTCTAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTTAT
U12 Branch Point Sequence:
TTTTATTGGACT
Flanking Amino Acid:
YPDGSKHFHQPPLGTNHLTA
Intron Amino Acid Position:
332

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89.3
0.93
0.9
87.9
29.3
Major BPS
87.7
0.94
0.8
77.7
36.7
Major PPT
66.3
0.37
1
56.3
44.2
Minor 5ss
44.7
-0.6
3.2
66.4
45.1
Minor BPS
62.9
0.49
1.7
84.97
35.1

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000013847
Chromosome:
14

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000039524
16031437 - 16051011
19575
ENSAPLT00000014456
16031437 - 16051011
19575